Restructure things so that the application is now just another module.

Kohana makes this type of transition fairly straightforward in that
all controllers/helpers/etc are still located in the cascading
filesystem without any extra effort, except that I've temporarily
added a hack to force modules/gallery into the module path.

Rename what's left of "core" to be "application" so that it conforms
more closely to the Kohana standard (basically, just
application/config/config.php which is the minimal thing that you need
in the application directory)

There's still considerable work left to be done here.

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